PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000263.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 211aa    MW: 23341 Da    PI: 9.3322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000263.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000192951123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C + Fs++  L  H++ H
  Itr_sc000263.1_g00021.1 29 FSCNFCQREFSTSQALGGHQNAH 51
                             89******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-72668No hitNo description
Gene3DG3DSA:3.30.160.602.4E-42755IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
METIRSNSKS SNAGESSERR DDSLPAKIFS CNFCQREFST SQALGGHQNA HKHERAIAKR  60
RKGLIDTFVT SHYHPYYHPY STISSQMPTF SSQMPVYNSL SNRSLGLMPN LHRLPSYHQS  120
SLLGRNYSRL EDIIRPASNM IINSGAFATA PVANSSKVEI KMGNTSTIKV DGNRTSAGDS  180
KTEGQNNPLL GDDEKGKDEE AAWGMDLTLK L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228940.14e-29PREDICTED: zinc finger protein 3-like
TrEMBLK4AS864e-29K4AS86_SOLLC; Uncharacterized protein
STRINGSolyc01g005190.1.11e-28(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-16C2H2 family protein